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Synthetic 3D brain data

Project
18022 IVVES
Description
  • Full pipeline from data preprocessing to synthetic data generation
  • Designed to work with moderately low amount (≈1000 samples) of input data
Contact
Harri Pölönen (VTT), MarkPijnenburg (Philips)
Email
harri.polonen@vtt.fi
Technical features

Input(s):

  • Real 3D brain scans
  • MRI, CT, …

Main feature(s):

  • Data preprocessing, registration, augmentation
  • Multi-GPU GAN training

Output(s):

  • Synthetic 3D brain data
Integration constraints
  • Implemented as Docker images, which can be converted to Singularity images
  • Multiple GPUs and lots of RAM (>100 GB) recommended
Targeted customer(s)

Researchers, data scientists.

Conditions for reuse
  • Mostly built on open-source technology
  • Component licenses: Apace 2.0 and MIT
Confidentiality
Public
Publication date
29-11-2022
Involved partners
Philips Electronics Nederland BV (NLD)
VTT Technical Research Centre of Finland Ltd. (FIN)